rs33146188 SNP Detail

Summary

• ID
  rs33146188
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155321023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTACCGT GAAGCGATGG
  TTTCTTCCCC AGCACCTTGT AAAGCGGGTT TGGTGGCATG AGCCTATAAT CCCAGCTCTC
  AGGAGGTAGA GACAGGAAGA TCAGAAGCTC AAAATTGTCT TTGGCTTTAT AGTGAATTTG
  AAGCCAGTCT GAGCTACACA ATACCCTCTC TCAAAAAGTA AATAAAAAGA ATGGACAGTC
  Y
  GAGAGTTCTG CGTCCCTCTC TGTACCCAGA GGGGCTTTGT CAATCCAAGA GCCCCACTCA
  CTCTAGACGT GTTTCCTACC ACCTCCCCTG AGGACCCCCA AAAGGCTCGC TTGCTCTCTC
  CTGCAGCCCT CATGGTTCTG ACTGACCCCT GATCTATCCT TACCACCAAA ATCAGGGTTA
  GGAAACTAGA AAAGTAGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46777561	NES11004167	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs33146188					SNP	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777561	NES11004167	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155321023 () rs orientation: forward

Symbol	Name	Function Class
Gm52713	predicted gene, 52713	within coordinates
Rr1208	regulatory region 1208	399 bp downstream
Rr606422	regulatory region 606422	1039 bp distal
Rr606423	regulatory region 606423	830 bp distal
Rr606424	regulatory region 606424	329 bp distal
Rr606425	regulatory region 606425	194 bp proximal
Rr606426	regulatory region 606426	1427 bp proximal
Tssr40625	transcription start site region 40625	1044 bp downstream