rs33129791 SNP Detail

Summary

• ID
  rs33129791
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90797406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACAAGAAAC ACTATGCCTG TTGGATGCTA ACGGGCACAG
  TTGGGGGGCT GATCTATGGT CAGGCATTCT CCCCTTCCTC TTTTTAATGA GAAATATTAC
  Y
  TCTGAATTTA TTGACCTCAC CTTTTATTTC TAATTTTATA CTGTTGGTTA TTTTGCCTGT
  ATGTATGTCT GAATCACGAG AATGTAGTAC CTGGGGAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45240622	mCV22962315	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss146921610	ENSMUSSNP3118207	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320391520	CHEV_2_90807218	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33129791					SNP	C	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90797406 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Celf1	CUGBP, Elav-like family member 1			Intron
				Noncoding-Transcript-Variant
Rr560607	regulatory region 560607			1862 bp distal
Rr560608	regulatory region 560608			1062 bp distal
Tssr18808	transcription start site region 18808			1981 bp downstream
Tssr18809	transcription start site region 18809			1953 bp downstream