rs33128453 SNP Detail

Summary

• ID
  rs33128453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155157372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCCCTGGC TGTCCTGGTA
  CTCACTCTAG ACCAGGTTGG CCTCGAACTC AGAAATCCAC CTGCCTCTGC CTCCCAAGTG
  CTGAGATTAA AGGCGTGTGC CACCACTTCC CAGTAGTCGG TTCTTTGTAT CATGTATTTC
  AGGGATCAAA TTCCGGTCGG GCTGGGTAGC AAGCAAGCAA ACAACTTTAC TTGTTGAACA
  Y
  CTCGCCGACC TGGCTTGAGT GAGTTTTCTC CTATAAACCA ATTTCCGTGC ATCCTCTGAT
  AGCTGTTCTC TGAGGAAACT AAGTGAGCCA TGTCTGCTTG GAGGCCAGAT AAACAAGTTA
  CCTGTCTACC CAATGTCACT GCCGAATCTA GCTCCCTCTT GGCTTGTCCC TAGCTTGTTT
  CTTGCTTCCA TTTGTCATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46775419	NES10983488	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33128453					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46775419	NES10983488	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155157372 () rs orientation: forward

Symbol	Name	Function Class
Pex10	peroxisomal biogenesis factor 10	509 bp downstream
Rer1	retention in endoplasmic reticulum sorting receptor 1	1195 bp downstream
Rr606361	regulatory region 606361	1682 bp distal