rs33124820 SNP Detail

Summary

• ID
  rs33124820
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118943153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAACC AGAAAGGCCG GATCAGAACA
  R
  TCATAAAGGA AGGGAAGAGT GACCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45240206	mCV23833181	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss147323367	ENSMUSSNP1756315	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33124820					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118943153 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12105	CpG island 12105	within coordinates
Gm57476	predicted gene, 57476	within coordinates
Rad51	RAD51 recombinase	142 bp upstream
Rr563414	regulatory region 563414	1122 bp distal
Rr563415	regulatory region 563415	931 bp distal
Rr563416	regulatory region 563416	within coordinates
Rr563417	regulatory region 563417	148 bp proximal
Tssr19603	transcription start site region 19603	137 bp upstream
Tssr25799	transcription start site region 25799	76 bp downstream