rs33112168 SNP Detail

Summary

• ID
  rs33112168
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95122933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTCACGC CGGGCCTGAC
  AACATCTGCC TGTGACCGCA GCACTCTGGG AGACTAAATC AGGATGATGA TGAGTTGACG
  TTGGCCTAAG TGTCATAAGA CCATGTTTCA AACCAACAAA GGAGGGCAGT TGCTTGTGCC
  GGACCTTGTA AAAGTAACCG ATGCCAAGAA TTATGGGAAA ACAGTTCTTA TATTTGGTTA
  Y
  TTGACAGGGA CATGACTTCT GACATGCCTT CTTTCCTGCC CTGTCACTCC TGATTTAACC
  TATAGCATCT ACCTAGATTA AAATGCATTT GCAAGACGAT GATTTTGGAG ATCAGTGAGG
  TCTATATACG GCTTGGTGGG TGAACATATC TGCTGCCAAC CTGGTGTCCT GATGGATCCC
  CAGTTCCCAC ATCCTCTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46772321	NES10661607	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33112168					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46772321	NES10661607	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95122933 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13503	CpG island 13503			1862 bp proximal
Gabpb2	GA repeat binding protein, beta 2			Intron
				Noncoding-Transcript-Variant
Gm16740	predicted gene, 16740			1835 bp upstream
Rr367482	regulatory region 367482			1310 bp upstream
Rr580850	regulatory region 580850			1691 bp distal
Rr580851	regulatory region 580851			1216 bp proximal
Rr580852	regulatory region 580852			1687 bp proximal
Rr580853	regulatory region 580853			1846 bp proximal
Tssr30503	transcription start site region 30503			1795 bp upstream