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rs33109708 SNP Detail
Summary
  • ID
    rs33109708
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:95132055 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCATGACTGC ACCTATAACA
    CCTTTTAGTG AACCAATCCC TGCTCAGGTC TAGGGCTACA GACACTACAA AGCAAGCCCT
    AAAAGTCATC CAGGTCACTG ACGCTGCTTA TCAGGAATGT TTGCTGCATT ACCAGGTTTC
    TCCTAGTTAG CTGACTTAAA AAAAAAAACC CTTCCTTTTA CATCTCCTAC AGAGTGACCT
    Y
    ATTATAACAG ACGGCATATA ATAGATTGTT TTCCAGAGAC AATGCTGACC CTGAACTTCT
    GACCCTTCTT ACTCCTCAAA GATTATATAA TAGGCTCTTA AACAAACAAA CAAAAACCAG
    AATCCTTAGG AAAAAAGATT TGTTTTTGCT CTTTTGACCT AGGTTCTAGC AATGTAACCC
    AGGCTAACTA GAAAGTTATT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46772390 NES10661131 PERLEGEN MM_PANEL2 f SNP C C C C C C C C C C T C C T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33109708 SNP C C C C C C C C C C T C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46772390 NES10661131 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:95132055 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm16740 predicted gene, 16740 within coordinates
Mllt11 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 11 Intron
Rr580860 regulatory region 580860 1250 bp distal
Rr580861 regulatory region 580861 884 bp distal
Rr580862 regulatory region 580862 within coordinates
Rr580863 regulatory region 580863 1640 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory