rs33108873 SNP Detail

Summary

• ID
  rs33108873
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95129942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAGAAGC CAGAGTTTCA
  GAGAGCCTTT CTACAGCACA CTATCAGCTC TTACCAGCCT GTGACTCCTA AAAAGTGGCC
  TTAAGTAGAT TCCAAAATGT CCCTAAATGA TGTGAAATGT CTCTACCAAA GTAGGAAAAG
  AGTTTAAAGC CAGGACACAA TCTACAAGAA GTGTGGGGGC TAAACAGTCT GTGGGCGCAG
  Y
  TGCAGTGACT GGTTTTGTCT TGTTTTTGCT TTTGAGTCTT GTTTCAAACT CAACTCTAGT
  TCAGGCTGGC TTTGAACACA AACCCTTCCT GCTGAGGCAT CTCTGGTGCT GGATTTCAGG
  AATATATTAC CAGGTCCAAA ACCTCTGTAA CCCTCGCTGT TCCATTACTC AAAATATGTA
  GTCCATCTGG GCCTCAAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46772381	NES10661194	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33108873					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46772381	NES10661194	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95129942 () rs orientation: forward

Symbol	Name	Function Class
Gm16740	predicted gene, 16740	within coordinates
Mllt11	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 11	Intron
Rr580859	regulatory region 580859	478 bp distal
Rr580860	regulatory region 580860	842 bp proximal
Rr580861	regulatory region 580861	1208 bp proximal
Rr580862	regulatory region 580862	1660 bp proximal