rs33105175 SNP Detail

Summary

• ID
  rs33105175
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95123055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCAGTTG CTTGTGCCGG
  ACCTTGTAAA AGTAACCGAT GCCAAGAATT ATGGGAAAAC AGTTCTTATA TTTGGTTACT
  TGACAGGGAC ATGACTTCTG ACATGCCTTC TTTCCTGCCC TGTCACTCCT GATTTAACCT
  ATAGCATCTA CCTAGATTAA AATGCATTTG CAAGACGATG ATTTTGGAGA TCAGTGAGGT
  M
  TATATACGGC TTGGTGGGTG AACATATCTG CTGCCAACCT GGTGTCCTGA TGGATCCCCA
  GTTCCCACAT CCTCTCTTTT TTGTTTTTTC CGAGACAGGG TTTCTCTGTG TAGTCCTGGC
  TGTCCTGGAA CTCACTCTGT AGACCAGGCT GGCCTCGAAC TCAGAAAATC GCCTGCCTCT
  GCCTCCCGAG TGCTGGGATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46772324	NES10661608	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33105175					SNP	C	C	C	C	C	C	C	C	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46772324	NES10661608	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95123055 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13503	CpG island 13503			1740 bp proximal
Gabpb2	GA repeat binding protein, beta 2			Intron
				Noncoding-Transcript-Variant
Gm16740	predicted gene, 16740			1713 bp upstream
Rr367482	regulatory region 367482			1188 bp upstream
Rr580850	regulatory region 580850			1813 bp distal
Rr580851	regulatory region 580851			1094 bp proximal
Rr580852	regulatory region 580852			1565 bp proximal
Rr580853	regulatory region 580853			1724 bp proximal
Rr580854	regulatory region 580854			1955 bp proximal
Tssr30503	transcription start site region 30503			1673 bp upstream
Tssr34428	transcription start site region 34428			1946 bp downstream
Tssr34429	transcription start site region 34429			1997 bp downstream