rs33093580 SNP Detail

Summary

• ID
  rs33093580
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123274657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCACG TGCTTCAGGA AGTGGGCTGG
  M
  GGGGAGGAGC CCTGGAGACA GCCCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45736703	mCV25107451	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C
ss149192960	ENSMUSSNP4820345	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		C
ss321670347	CHEV_5_123586603	CHEVERUD	SCREENING_POP	f	SNP					A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33093580					SNP	A	A	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123274657 () rs orientation: forward

Symbol	Name	Function Class
AI480526	expressed sequence AI480526	within coordinates
Cpgi16574	CpG island 16574	863 bp distal
Cpgi16575	CpG island 16575	1148 bp proximal
Cpgi16576	CpG island 16576	1913 bp proximal
Gm38102	predicted gene, 38102	within coordinates
Rr378574	regulatory region 378574	within coordinates
Rr620108	regulatory region 620108	1759 bp distal
Rr620109	regulatory region 620109	789 bp distal
Rr620110	regulatory region 620110	within coordinates
Rr620111	regulatory region 620111	128 bp proximal
Rr620112	regulatory region 620112	570 bp proximal
Rr620113	regulatory region 620113	1955 bp proximal
Tssr48758	transcription start site region 48758	962 bp downstream
Tssr48759	transcription start site region 48759	792 bp downstream
Tssr48760	transcription start site region 48760	739 bp downstream
Tssr48761	transcription start site region 48761	45 bp upstream
Tssr53205	transcription start site region 53205	1064 bp upstream
Tssr53206	transcription start site region 53206	1035 bp upstream
Tssr53207	transcription start site region 53207	39 bp upstream
Tssr53208	transcription start site region 53208	1124 bp downstream