rs33088787 SNP Detail

Summary

• ID
  rs33088787
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:94236816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCG GCTCCGGGAT TCCCCCTGAT
  S
  GGGCGCGGGC AGAGAGGGGG CACCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45235822	mCV25142691	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	G
ss146954258	ENSMUSSNP4278132	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33088787					SNP	G	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:94236816 () rs orientation: forward

Symbol	Name	Function Class
2810002D19Rik	RIKEN cDNA 2810002D19 gene	236 bp upstream
Rr561373	regulatory region 561373	310 bp distal
Rr561374	regulatory region 561374	318 bp distal
Rr561375	regulatory region 561375	6 bp proximal
Rr561376	regulatory region 561376	198 bp proximal
Rr561377	regulatory region 561377	231 bp proximal
Rr561378	regulatory region 561378	285 bp proximal
Tssr19003	transcription start site region 19003	248 bp upstream
Tssr19004	transcription start site region 19004	292 bp upstream
Tssr25328	transcription start site region 25328	1469 bp upstream
Tssr25329	transcription start site region 25329	176 bp downstream
Ttc17	tetratricopeptide repeat domain 17	Intron