rs33079714 SNP Detail

Summary

• ID
  rs33079714
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123275890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGCC CATTTCACAC ACACAACCGC
  Y
  ACATCAGCGT GGGGGAGGGG CTGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45734282	mCV25107452	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss149192964	ENSMUSSNP6936099	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss321670348	CHEV_5_123587836	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33079714					SNP	T	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123275890 () rs orientation: forward

Symbol	Name	Function Class
AI480526	expressed sequence AI480526	within coordinates
Cpgi16575	CpG island 16575	within coordinates
Cpgi16576	CpG island 16576	680 bp proximal
Gm38102	predicted gene, 38102	within coordinates
Rr378574	regulatory region 378574	within coordinates
Rr620110	regulatory region 620110	1106 bp distal
Rr620111	regulatory region 620111	within coordinates
Rr620112	regulatory region 620112	642 bp distal
Rr620113	regulatory region 620113	722 bp proximal
Rr620114	regulatory region 620114	1197 bp proximal
Rr620115	regulatory region 620115	1419 bp proximal
Tssr48760	transcription start site region 48760	1972 bp downstream
Tssr48761	transcription start site region 48761	1155 bp downstream
Tssr48762	transcription start site region 48762	784 bp upstream
Tssr48763	transcription start site region 48763	828 bp upstream
Tssr53207	transcription start site region 53207	1272 bp upstream
Tssr53208	transcription start site region 53208	87 bp upstream
Tssr53209	transcription start site region 53209	1246 bp downstream