rs33028586 SNP Detail

Summary

• ID
  rs33028586
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118286095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGGAAGAAA TGAGTGTCAC TCACCAGAGA GCTGTGTGTG
  CAGAAGGGAG GTGTGGGTGA AGATGTACCC ATGCCTGGTC AGCTGTATGT CCCGCGGTTA
  R
  TGCAATCCCT GACAGGTGTG AAGTTTAGGA GCCTGGCATG TCCGAGTCCA GTAGGGAGGC
  CTGTTTGGGT GATGTGGTCA ACAAGATATG CCTGGACTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45728504	mCV23178363	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss147308091	ENSMUSSNP2237372	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33028586					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118286095 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14684	CpG island 14684			850 bp distal
Elovl1	ELOVL fatty acid elongase 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr598393	regulatory region 598393			763 bp distal
Rr598394	regulatory region 598394			629 bp distal
Rr598395	regulatory region 598395			313 bp proximal
Rr598396	regulatory region 598396			814 bp proximal
Tssr38657	transcription start site region 38657			2000 bp downstream
Tssr38658	transcription start site region 38658			704 bp downstream
Tssr38659	transcription start site region 38659			82 bp downstream
Tssr38660	transcription start site region 38660			783 bp upstream
Tssr38661	transcription start site region 38661			804 bp upstream
Tssr38662	transcription start site region 38662			843 bp upstream