rs33022879 SNP Detail

Summary

• ID
  rs33022879
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154111218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTATCTATC ACAGAACTAG CCACATAGAC TGGCTTTGCC
  AGCAGGGTCC TGGTCTCAGC TGGGCATGCT GTATCACTTG GATGCCATCT TCTTGATCTT
  R
  CTAGGCAGGG AGACATCTGA CTGCTGTAGT GGGGGCACCT TCACGCCCTT TTGCTTCAGC
  TGACTGTAGA AGTCACTCCT CTCCGAGATG ATCCTCTGAA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46761950	NES10939577	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33022879					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46761950	NES10939577	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154111218 () rs orientation: forward

Symbol	Name	Function Class
Ccdc27	coiled-coil domain containing 27	Coding-Synonymous
Cpgi15428	CpG island 15428	639 bp distal
Gm57064	predicted gene, 57064	within coordinates
Rr606055	regulatory region 606055	1916 bp distal
Rr606056	regulatory region 606056	551 bp distal
Rr606057	regulatory region 606057	596 bp distal
Rr606058	regulatory region 606058	41 bp distal
Smim1	small integral membrane protein 1	668 bp upstream
Tssr40573	transcription start site region 40573	702 bp downstream
Tssr40574	transcription start site region 40574	549 bp downstream
Tssr44854	transcription start site region 44854	1127 bp upstream
Tssr44855	transcription start site region 44855	1075 bp upstream
Tssr44856	transcription start site region 44856	842 bp upstream
Tssr44857	transcription start site region 44857	769 bp upstream
Tssr44858	transcription start site region 44858	669 bp upstream