rs33022876 SNP Detail

Summary

• ID
  rs33022876
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:154110858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCAGTTC CGTGCTCCCA
  GGTAGAGCCT GGGCACTCTC CAGATGGAAG ACAGAGATGG CCCCTTTGAA CTGGTGGCAC
  CCAGTGCAGG GGAGCTGCAG TAGCAGAAGA GCGGGTGCGC AAGATGTGGA TGAAGAGCCA
  GCAGGTGAGT GAGCGCTCTA CTGAGCAGAA CACGTGGTAC AGACTTCATG ACCCACAGAC
  S
  GCAGGAGCCC AAGGATTGGG AAGATGTCCT CTGTAGCTCT ACTGCCTCCT GCCTCCCACC
  CTTTCTCCAT CTTCCAAAGG GGCCCCGGTA GCAAGAGCAT GCCCCAGCAG AAGTTTGGAT
  CAGAAGGAGC ATGGGGGCAC CCAGCCTCTG ACCCAGAGGA GGGTGCAGTG GGAGGGGACA
  TGACCTGGGT GGTTCAGGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46761947	NES10939576	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33022876					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46761947	NES10939576	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154110858 () rs orientation: forward

Symbol	Name	Function Class
Ccdc27	coiled-coil domain containing 27	238 bp downstream
Cpgi15428	CpG island 15428	279 bp distal
Gm57064	predicted gene, 57064	within coordinates
Rr606055	regulatory region 606055	1556 bp distal
Rr606056	regulatory region 606056	191 bp distal
Rr606057	regulatory region 606057	236 bp distal
Rr606058	regulatory region 606058	within coordinates
Smim1	small integral membrane protein 1	308 bp upstream
Tssr40573	transcription start site region 40573	342 bp downstream
Tssr40574	transcription start site region 40574	189 bp downstream
Tssr44854	transcription start site region 44854	767 bp upstream
Tssr44855	transcription start site region 44855	715 bp upstream
Tssr44856	transcription start site region 44856	482 bp upstream
Tssr44857	transcription start site region 44857	409 bp upstream
Tssr44858	transcription start site region 44858	309 bp upstream