rs33022168 SNP Detail

Summary

• ID
  rs33022168
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154109651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTTAAAG ATCCCAATCC
  CCCCTTTACC GTGTCACCAG TTGTGGGCAA AGTGCTCTCT ACAGTGGAAT GTGGGGAGAG
  GGGACTTTTG CTTTCCCCAA ATTAAGAGTA GCCACCTCTT TCCTGCCTGT GTGATGGCTG
  GAGCTGCTAC ACCCACATAT GCAGTCTAGA TATCCATGCA ACACTCGCCT CAATAGGGCT
  R
  TCTAAATCTA CAGCAAAACC TGCCCACTTG TAGACTTTGG GGTGTGAAGA GAGTCTCCCC
  AGTTTGTTCA AGCCTGAGGT GGTAGGATCC TGTTATTTGC AGACTATCTT TGGCTGGACA
  GGCCGCCAGA TAGCAGTGAG CTCTTTGGGC CAGGCTAGTC TAGGCTTCCT TCGTGGTAAT
  CTGTCATAGA CGCAGTCGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46761938	NES10939573	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33022168					SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46761938	NES10939573	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154109651 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc27	coiled-coil domain containing 27			1445 bp downstream
Cpgi15428	CpG island 15428			599 bp proximal
Gm57064	predicted gene, 57064			527 bp upstream
Rr606055	regulatory region 606055			349 bp distal
Rr606056	regulatory region 606056			412 bp proximal
Rr606057	regulatory region 606057			950 bp proximal
Rr606058	regulatory region 606058			1026 bp proximal
Smim1	small integral membrane protein 1			Intron
				mRNA-UTR
Tssr40573	transcription start site region 40573			828 bp upstream
Tssr40574	transcription start site region 40574			1000 bp upstream
Tssr44852	transcription start site region 44852			1417 bp upstream
Tssr44853	transcription start site region 44853			1396 bp upstream
Tssr44854	transcription start site region 44854			429 bp downstream
Tssr44855	transcription start site region 44855			463 bp downstream
Tssr44856	transcription start site region 44856			712 bp downstream
Tssr44857	transcription start site region 44857			732 bp downstream
Tssr44858	transcription start site region 44858			866 bp downstream