rs33022052 SNP Detail

Summary

• ID
  rs33022052
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103668779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTGCAGGC ACCTGTACCC ACATGTTCAC CCCCAAATAC
  ACTTCATTAA AAAATAAAAT AAGCCGGGCG TGGTGGCGCA TGCCTTTAAT CCCAGCACTT
  R
  GGAGGCAGAG GCAGGCGGAT TTCTGAGTTC GAGGCCAGCC TGGTCTACAG AGTGAGTTCC
  AGGACAGCCA GGGCTATACA GAGAAACCCT GTCTCGAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45227516	mCV22333255	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss147139603	ENSMUSSNP1776806	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss320442871	CHEV_2_103678591	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33022052					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103668779 () rs orientation: forward

Symbol	Name	Function Class
Gm13875	predicted gene 13875	520 bp upstream
Gm13877	predicted gene 13877	917 bp upstream
Gm56363	predicted gene, 56363	675 bp upstream
Gm75184	predicted gene, 75184	within coordinates
Rr561946	regulatory region 561946	245 bp proximal
Tssr19174	transcription start site region 19174	486 bp upstream