rs33021379 SNP Detail

Summary

• ID
  rs33021379
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154109337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCCCAGC AGCGGGGGCA
  CTGGGGATAC AGCCCGTCCT ACATAACCCT GTGTACCTGA AGGTACAGCA GGCCACTGGG
  CTGCAGGAAA TGGGCTGAGG TTCTGGGCTC CAGAACCTCA GGACGCTCGG CTGAATGGGA
  AGAGGAAGGG CACCATCTTA ACAGCCGCGC GTGTCTTCTG GTGGAGCCTC TGACTGACAG
  Y
  CTGAGGTGAC AGAGTGTTGC TGGAGTGTGG GCGGGCTGTT GTTTCAGAAA GAATCTGCCA
  GCTGCTTGCA CAGGGCTGTC CCTTCCTCCT GTGGCAGCCA CATTAGGCTG AGACAGGTTA
  AAGATCCCAA TCCCCCCTTT ACCGTGTCAC CAGTTGTGGG CAAAGTGCTC TCTACAGTGG
  AATGTGGGGA GAGGGGACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46761929	NES10939570	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33021379					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46761929	NES10939570	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154109337 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc27	coiled-coil domain containing 27			1759 bp downstream
Cpgi15428	CpG island 15428			913 bp proximal
Gm57064	predicted gene, 57064			841 bp upstream
Rr606055	regulatory region 606055			35 bp distal
Rr606056	regulatory region 606056			726 bp proximal
Rr606057	regulatory region 606057			1264 bp proximal
Rr606058	regulatory region 606058			1340 bp proximal
Smim1	small integral membrane protein 1			Intron
				mRNA-UTR
Tssr40573	transcription start site region 40573			1142 bp upstream
Tssr40574	transcription start site region 40574			1314 bp upstream
Tssr44852	transcription start site region 44852			1103 bp upstream
Tssr44853	transcription start site region 44853			1082 bp upstream
Tssr44854	transcription start site region 44854			743 bp downstream
Tssr44855	transcription start site region 44855			777 bp downstream
Tssr44856	transcription start site region 44856			1026 bp downstream
Tssr44857	transcription start site region 44857			1046 bp downstream
Tssr44858	transcription start site region 44858			1180 bp downstream