rs33021374 SNP Detail

Summary

• ID
  rs33021374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154109062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACCAAAC CATCCCTGAC
  TCCCCCAGGG CCAGCCACCC CAGGAAAAGG ACAGACACAG TGACATCACT GCCATGCATG
  GTTGCTCCGA CCTACTGCCA ACAGGCTTAT AGTGGACACT AGCATGTCAT TTACCCTCTG
  ACCTCTCCTG TTACCTCGTG TTTACCTAAA GGGAGCAGGG CACATACTAG AAGTACAGGC
  Y
  GTGAGATACG GATAAAGTTA GGTACTGGGT ACCCAATGTT CCCTTGTGGC ACCCAGCTCC
  AGGACCCGGA CCCTGTCTCC CAGCAGCGGG GGCACTGGGG ATACAGCCCG TCCTACATAA
  CCCTGTGTAC CTGAAGGTAC AGCAGGCCAC TGGGCTGCAG GAAATGGGCT GAGGTTCTGG
  GCTCCAGAAC CTCAGGACGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46761923	NES10939568	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33021374					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46761923	NES10939568	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154109062 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15428	CpG island 15428			1188 bp proximal
Gm57064	predicted gene, 57064			1116 bp upstream
Rr606055	regulatory region 606055			within coordinates
Rr606056	regulatory region 606056			1001 bp proximal
Rr606057	regulatory region 606057			1539 bp proximal
Rr606058	regulatory region 606058			1615 bp proximal
Smim1	small integral membrane protein 1			Intron
				mRNA-UTR
Tssr40573	transcription start site region 40573			1417 bp upstream
Tssr40574	transcription start site region 40574			1589 bp upstream
Tssr44852	transcription start site region 44852			828 bp upstream
Tssr44853	transcription start site region 44853			807 bp upstream
Tssr44854	transcription start site region 44854			1018 bp downstream
Tssr44855	transcription start site region 44855			1052 bp downstream
Tssr44856	transcription start site region 44856			1301 bp downstream
Tssr44857	transcription start site region 44857			1321 bp downstream
Tssr44858	transcription start site region 44858			1455 bp downstream