rs33017018 SNP Detail

Summary

• ID
  rs33017018
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189496861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTCATACC TTCCTGAATG
  TCATACAAAG GGAAGCAGGC AGTGACTTTG TATTTGTTTC TTTGTATTAT GGGATGTAGT
  CCAGACAACT TGAATTTTCC TCCTTTCCTA TCCGGTGGTG GAAGAATTGG GAAGTGGAGC
  TGTCACTGGC TGGGTCCTAA CAGCTGTTTC ACTGTCTACA GGGAAGGGAC ATTTGAGGAA
  R
  GTTCCAGGGC TTCTAACCAG TTCTCACAGT CCTCCATAGC AAGAAAGAGG CACGCAGTGT
  ATACGAGATG GTAAACATTT CTGGAACCAT CTGCCCTATG TCTGTCCTTG CTGAGGATGT
  AGGCAAGCCA TCCTGGGATG GAGGGTGCCA GCCACATTTT GGACAGGGGA TACACACACA
  CACACACACA CACACACACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46760967	NES10636914	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33017018					SNP	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46760967	NES10636914	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189496861 () rs orientation: forward

Symbol	Name	Function Class
Ptpn14	protein tyrosine phosphatase, non-receptor type 14	Intron
Rr425842	regulatory region 425842	within coordinates