rs33016486 SNP Detail

Summary

• ID
  rs33016486
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189496474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGAGCA GGCGCCTCTA
  GACTCATGAT GTCTCCTGGA AGGGTCTGAG CACAGGGGCA TAGGTGTGCT ACTCCCCACA
  TCTAGAGAGG GGGCCAAGAT GGAACCCTGG ACCTTCTCTC CTAAGAATCT TGATCCTAGT
  TCCTGCCTCC AGATGCAGGA GAGGGAGAGG GAGAGGGAGA GGACATCTTA CATACAGCTC
  W
  GGGACAGCCA GAAGACAATC GCCTCGAGGC CTGGCTGTGA GCTCTGGGTC TAGAGGGTCT
  GCTGTGGCAG TGGTTCTCAG GACCTTGTGT TTGGACTTCC AGGGGCGGGT CTAGTACTTG
  CATGCAAATA TGACAGAAAC GTTTGTTCCC TATCAGCACA GAAGGGGGTG GTGGCCACCT
  TCCTGATACT CATACCTTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46760955	NES10636906	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	T		A	A	A	T		A
ss320191536	CHEV_1_191588156	CHEVERUD	SCREENING_POP	f	SNP									T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33016486					SNP	A	A	A	A	A	A	A	T	T	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46760955	NES10636906	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189496474 () rs orientation: forward

Symbol	Name	Function Class
Ptpn14	protein tyrosine phosphatase, non-receptor type 14	Intron
Rr372632	regulatory region 372632	1899 bp downstream
Rr425841	regulatory region 425841	1987 bp distal
Rr425842	regulatory region 425842	2 bp proximal