rs33015774 SNP Detail

Summary

• ID
  rs33015774
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189496191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTATCAA TCAGAGCTAA
  CCAATGAGCG TGGGGCCCGA TCAGCCTCAG CTCATTGTCC TTTGCCTTTA TGTAAAGCAG
  AGAGTCCCTT TCTTTATGCT AAGGTCCTAT AGACAGGGCA GTGTCCTTTA TGCTAGTGTA
  GTTAACCCAG TCTAGTTCTA CTTGCTTTCA AATTCAATAG GAATGCTCTC CACAGCTCCA
  R
  GCCCAGCATC TCACCCTGGA GGCAGGTCCT TCTCTTGATG GAGCTCAACC CCTATTATGC
  CTTGTTCATC ACAGCTTCCC CAGGGCTGAG CAGGCGCCTC TAGACTCATG ATGTCTCCTG
  GAAGGGTCTG AGCACAGGGG CATAGGTGTG CTACTCCCCA CATCTAGAGA GGGGGCCAAG
  ATGGAACCCT GGACCTTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46760943	NES10636897	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33015774					SNP	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46760943	NES10636897	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189496191 () rs orientation: forward

Symbol	Name	Function Class
Ptpn14	protein tyrosine phosphatase, non-receptor type 14	Intron
Rr372632	regulatory region 372632	1616 bp downstream
Rr425841	regulatory region 425841	1704 bp distal
Rr425842	regulatory region 425842	285 bp proximal