rs33014267 SNP Detail

Summary

• ID
  rs33014267
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189495135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTAACAA CGGGGCTGTC
  TCCCTCAGCT CCTGGTTTTA TGGTTTTTAA AGACAGAGTC TTAGCTTCTA GCTGAGCTGG
  CACTCATTAT GTAGCCCAGG CTGGACTCAT ACTCAACAGC AATCTTTTCT ATCTCAGCCT
  CTTAGATGCT AGAATAACAG GCAAGATCCA CCCCTCCCAG CTTCTTCCCA GTTTTGAGAA
  Y
  GACAGCTGGT ATTGAGTCTG CCTAGTGAGT GATCCAGGTC CTGTTGCTCT CTGTCCCTAA
  GGGGCTGGCC TTTCTCATAG TTTCTGCCTG TGTTGTCTGT GTAGTCTAGG TAGAGGAACA
  TGGCTTGCCT GACTATGTCT TTCTCTACTA CCTCAGGGCT TAGGTTTACC ACAGGTTTGC
  TGCAAACCTG TTGCAAGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46760925	NES10636933	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T		C	C	C	T		C
ss320191521	CHEV_1_191586817	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33014267					SNP	C	C	C	C	C	C	C	T	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46760925	NES10636933	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189495135 () rs orientation: forward

Symbol	Name	Function Class
Ptpn14	protein tyrosine phosphatase, non-receptor type 14	Intron
Rr372632	regulatory region 372632	560 bp downstream
Rr425841	regulatory region 425841	648 bp distal
Rr425842	regulatory region 425842	1341 bp proximal