rs32995943 SNP Detail

Summary

• ID
  rs32995943
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146682642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATATCCA GTTTCCCTAA
  AATGAGCCTG GAGGGCCAGG AGGGGCCAGT CTCTGTCGAC AGAGACTACA GTGAAGCTAG
  GTAGTAGTTA AAGTTTTCTG CACAAATCTT AGATCCAGCC AACTTGTACT CTCTTTTAAA
  ATATGAAATA GGCCAGATGC TGTGGTGCTT GCCTGTAATC CAGCACTTGG GAGGTAGAGA
  Y
  CAAAGAATCA AGAGTTCCAG CTCACTCTTA GTTGAAAAGC GAGCTGGAGG TCAGTGTGAC
  CTACAGAAGA CCTTGAAAAA AATAGACCCA CTTAAAAAAT AAACCAATAA ATAAAAATAT
  AAGATAAAAC AAATAACAAA CCAGGATATG CTCAAAATCC TTAGAAGCTA AAATAGATTT
  CATTTTTCTC CTGGCACATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45223448	mCV23999494	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss147873721	ENSMUSSNP6452327	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320546147	CHEV_2_146666458	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32995943					SNP	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146682642 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12372	CpG island 12372	979 bp distal
Gm14114	predicted gene 14114	1126 bp upstream
Gm34978	predicted gene, 34978	296 bp downstream
Rr566735	regulatory region 566735	1927 bp distal
Rr566736	regulatory region 566736	1192 bp distal
Rr566737	regulatory region 566737	731 bp distal
Tssr20612	transcription start site region 20612	1721 bp downstream