rs32980499 SNP Detail

Summary

• ID
  rs32980499
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172390746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTCTGTTTGG GATGAAAAAA ATTAACTATA ACAATTAGGC CAATTATTTT CGTTTCGTTG
  AATTAAAAAA TAACACTGAG TATTGCTTTT TGGCTTGGAC GGAAAATCTT GGGGTGCAGC
  AGCATTCTGT GGATAGAAGC TTTGCTTTCT GCCTCCCATG GGACGAGGTG TGCCCATATC
  TCAGGGCGAC CTCCCTGTAG TCCCCCTCCC ACTTTACAGC ACCTCATTCC ACGCGGCCCG
  TGGCGATGGA GGTTTATTCT GCCTGGAACC TCTTTTCCTG GGCGAGTAGA GGCTTCTGAA
  K
  AGCCGCCCGT GACAGCTGCA GAACCGGCGC TCCGCAGGGC TGGGCATCGC AGCAGGGATG
  GGCCTGGGCG GGGGAGCTCG GGTCTCCTCC AGCCGCGGCC CGCAGTCAGA TACAGCTTCG
  GGCTATAGCT GCAGCACGCG GTTGTCCGAT TTATTCACAG CAGGTATTAC CGTGAGTTTC
  CTCTTTGGAG CTGGGGGAGC GGACTCCTTC TCGGAATCCT TCCCCTCCCT TCCCTCAGTG
  GGCAGGTCAG TAAAGTACCC AGGGAGAGGG AAAGGGGGGG GGGGGGCACT AGGGAACAGT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45221156	mCV23507071	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs32980499					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172390746 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12823	CpG island 12823	875 bp distal
Cpgi12824	CpG island 12824	within coordinates
Cpgi12825	CpG island 12825	433 bp proximal
Rr571697	regulatory region 571697	277 bp proximal
Rr571698	regulatory region 571698	1466 bp proximal
Rr571699	regulatory region 571699	1782 bp proximal
Tfap2c	transcription factor AP-2, gamma	Intron
Tssr21966	transcription start site region 21966	755 bp upstream
Tssr21967	transcription start site region 21967	810 bp upstream
Tssr21968	transcription start site region 21968	1935 bp upstream