rs32932115 SNP Detail

Summary

• ID
  rs32932115
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:94235427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTTACCT TCCCACTGTA
  ATATTCAACA TATAAATGAT CCATTTCCGT TAATTAACCT TCACTTTTCA GATGGATTTC
  TTTTCCGGCT GAGTGGCAGG CCACCAAAAT GGGAAGGAGA AGTCAATGTC ATCGAGTATA
  AATAGCTGTG GCCAGAAACA ATATAGCGAA GGAGCCAATG GGAGAAGGGC TCCCCAAATT
  K
  CAGCATAAGT GACTGAATTC AATGCCTCCC TTCACGCGGA CCTCAGCAAA CCACCAACAG
  CAATCAAAAG ATGAAAACAG GGATGGTGCA GGATTTCCAA TCTTACGTTG GAAAGGCAGC
  CTTACTGTAT TTTTCTAGGG GTTCTGACAT TTTTAAACTC TCAGTTGGAG GCTAATGAAA
  ATTAACTTGG ATCTTGAACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45214217	mCV25142665	ABI	CRAMUS_MOUSE	f	SNP	T	G	G	G
ss320397640	CHEV_2_94245239	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32932115					SNP	T	G	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:94235427 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2810002D19Rik	RIKEN cDNA 2810002D19 gene			1625 bp upstream
Cpgi11962	CpG island 11962			932 bp proximal
Rr561373	regulatory region 561373			579 bp proximal
Rr561374	regulatory region 561374			1050 bp proximal
Rr561375	regulatory region 561375			1395 bp proximal
Rr561376	regulatory region 561376			1587 bp proximal
Rr561377	regulatory region 561377			1620 bp proximal
Rr561378	regulatory region 561378			1674 bp proximal
Tssr19003	transcription start site region 19003			1637 bp upstream
Tssr19004	transcription start site region 19004			1681 bp upstream
Tssr25328	transcription start site region 25328			80 bp upstream
Tssr25329	transcription start site region 25329			1565 bp downstream
Ttc17	tetratricopeptide repeat domain 17			Intron
				mRNA-UTR