rs32894820 SNP Detail

Summary

• ID
  rs32894820
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141812643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGAGAGAGAG AGAGAGAGAG AGAGAGATTG AAAGTCCGCT TTCTGGATAA ACCGCACAGC
  TTGGCTGCAG CCAAGTTCAC TTGGAATTCC TGGGTACATA CTTCCCGAGC TGTATACTTC
  CGGAGTCCAA TCACACTCTA TACACTGCTA CTTCTTATTT GCACTGATAG AAAGGGATTA
  ATTGGGAAAT GGCTTGTGAT TTGGGAAGTG AAAAGGGCAT TTTTGGAAAC AGGTTCGGAG
  CGCAAGAGTA ACTGCTAACA TTTCACGTCC TTACTCTGAA CCCGGCCTGG GTGACCCCAC
  M
  CCCGCCCCGC CCCGCCTCGC CTCCTGAACA TTCTCCCTCA ACCTCTCCAC CCGGCACAGC
  CCGGGCCTAT AGTTTGCATT TCACCCTGAC AGACTCGAGG CAGGTCATTC AGAGAGTCCC
  AGAGGTGGAA GCAAGGAATA CTGGTACTTT TCCATGCCGG GATTCAGCTC TAGACCTGCC
  CCTACACCGC ATCTAATCTA GCTGGGCAGG TCTGTCTCTT CCAAGCGGGG AGAGACCAAG
  GACTTAACAG CCAAAGCTGA GCTGAGAGGA AAACTAAAAG AGTCGCATCG CACACTGTCC
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45709354	mCV22555362	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs32894820					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141812643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15252	CpG island 15252	522 bp distal
Rr603988	regulatory region 603988	982 bp distal
Rr603989	regulatory region 603989	1011 bp distal
Rr603990	regulatory region 603990	within coordinates
Rr603991	regulatory region 603991	352 bp distal
Tmem51	transmembrane protein 51	1028 bp upstream
Tmem51os1	Tmem51 opposite strand 1	within coordinates
Tssr44419	transcription start site region 44419	1113 bp upstream
Tssr44420	transcription start site region 44420	1070 bp upstream
Tssr44421	transcription start site region 44421	769 bp upstream
Tssr44422	transcription start site region 44422	649 bp upstream