rs32884650 SNP Detail

Summary

• ID
  rs32884650
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:115596647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCTTTGAG GATTGGGGGA TTAAGAGGTC AGTTTGTGAG
  GCAACTGAAG GAAACCTCAG CCATTTGGAC CTGTCAGAGA GCAAACTAAA AGCAAAGGGA
  R
  TCCGTTGGGG TGTAGAGACC AGAGTTAGGC AAAGGGCTTG GGTCCTAAAA GATTTGTGAT
  CTTTTAGCGG GCTCAGAATC TGTGTGCTTT TGTTAAGAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45707459	mCV24655201	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss147275247	ENSMUSSNP6395458	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss321276236	CHEV_4_115412055	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32884650					SNP	G	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:115596647 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14611	CpG island 14611			1287 bp distal
Cpgi14612	CpG island 14612			616 bp distal
Efcab14	EF-hand calcium binding domain 14			Intron
				Noncoding-Transcript-Variant
Rr597763	regulatory region 597763			874 bp distal
Rr597764	regulatory region 597764			1934 bp distal
Rr597765	regulatory region 597765			1748 bp distal
Rr597766	regulatory region 597766			1469 bp distal
Tssr38464	transcription start site region 38464			1698 bp downstream
Tssr38465	transcription start site region 38465			1640 bp downstream
Tssr38466	transcription start site region 38466			1610 bp downstream
Tssr38467	transcription start site region 38467			1003 bp downstream