rs32853686 SNP Detail

Summary

• ID
  rs32853686
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:94237030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCCA TCTTGCCCCC CCGGCCGGGC
  Y
  GCTCACACCG GAAGCGGAAG CGACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45203518	mCV25142788	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss146954265	ENSMUSSNP1228565	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320397653	CHEV_2_94246842	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32853686					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:94237030 () rs orientation: forward

Symbol	Name	Function Class
2810002D19Rik	RIKEN cDNA 2810002D19 gene	22 bp upstream
Rr561373	regulatory region 561373	524 bp distal
Rr561374	regulatory region 561374	532 bp distal
Rr561375	regulatory region 561375	187 bp distal
Rr561376	regulatory region 561376	within coordinates
Rr561377	regulatory region 561377	17 bp proximal
Rr561378	regulatory region 561378	71 bp proximal
Tssr19003	transcription start site region 19003	34 bp upstream
Tssr19004	transcription start site region 19004	78 bp upstream
Tssr25328	transcription start site region 25328	1683 bp upstream
Tssr25329	transcription start site region 25329	within coordinates
Ttc17	tetratricopeptide repeat domain 17	mRNA-UTR