About   Help   FAQ
rs32733027 SNP Detail
Summary
  • ID
    rs32733027
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:101352311 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACATAGAGAG AACCTATCTC
    CAAAACTTTT TTTTTTTAAA TTGGTTTGTG TGTGCCATAG CATACACATG GAAGCCATAG
    GACAACTTTT GGGAACTGTT TTTCTCTCTG CTTTGTTGAG ACAGGGTTTT TCTGTCTCTG
    CCTCTCTTTG TACTGTAGGC TAGCTGGGCT GTGAACTTCA AGCTGATCTC TTTGTTTTTG
    Y
    CTTTCTTCTC ACAGTAGGGT GTTGGATTAC AGATTGGAGC CTAGGCTGCA CCCAGCTTTT
    TGTTGGTTCT GGGGATCAGA TTTAGATGGC CAAACTAGTG AGGCAAGTGC TGTACACCTG
    CAGAGTCCAG ATATACAATT TTTTTTTAAA AAAATTACAT TTATTTATTC TTTTCTTCTT
    AGTATTGCCC TGGCTGTTTT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
ss45686647 mCV22691425 ABI CRAMUS_MOUSE f SNP C T T
ss147123211 ENSMUSSNP2723188 ENSEMBL ENSEMBL_Sanger f SNP C T
ss321230243 CHEV_4_101167719 CHEVERUD SCREENING_POP f SNP C C
SNP Consensus Information
SNP Consensus Type
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
rs32733027 SNP C T T C C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:101352311 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi14501 CpG island 14501 1021 bp proximal
Dnajc6 DnaJ heat shock protein family (Hsp40) member C6 1517 bp upstream
Rr596165 regulatory region 596165 1219 bp distal
Rr596166 regulatory region 596166 1044 bp proximal
Rr596167 regulatory region 596167 1545 bp proximal
Tssr37995 transcription start site region 37995 1431 bp upstream
Tssr37996 transcription start site region 37996 1562 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/25/2025
MGI 6.24
The Jackson Laboratory