rs32733027 SNP Detail

Summary

• ID
  rs32733027
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101352311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATAGAGAG AACCTATCTC
  CAAAACTTTT TTTTTTTAAA TTGGTTTGTG TGTGCCATAG CATACACATG GAAGCCATAG
  GACAACTTTT GGGAACTGTT TTTCTCTCTG CTTTGTTGAG ACAGGGTTTT TCTGTCTCTG
  CCTCTCTTTG TACTGTAGGC TAGCTGGGCT GTGAACTTCA AGCTGATCTC TTTGTTTTTG
  Y
  CTTTCTTCTC ACAGTAGGGT GTTGGATTAC AGATTGGAGC CTAGGCTGCA CCCAGCTTTT
  TGTTGGTTCT GGGGATCAGA TTTAGATGGC CAAACTAGTG AGGCAAGTGC TGTACACCTG
  CAGAGTCCAG ATATACAATT TTTTTTTAAA AAAATTACAT TTATTTATTC TTTTCTTCTT
  AGTATTGCCC TGGCTGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45686647	mCV22691425	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss147123211	ENSMUSSNP2723188	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss321230243	CHEV_4_101167719	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32733027					SNP	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101352311 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14501	CpG island 14501	1021 bp proximal
Dnajc6	DnaJ heat shock protein family (Hsp40) member C6	1517 bp upstream
Rr596165	regulatory region 596165	1219 bp distal
Rr596166	regulatory region 596166	1044 bp proximal
Rr596167	regulatory region 596167	1545 bp proximal
Tssr37995	transcription start site region 37995	1431 bp upstream
Tssr37996	transcription start site region 37996	1562 bp upstream