rs32698241 SNP Detail

Summary

• ID
  rs32698241
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:82456955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAATTACC AGTACATAAA
  AGGCAGCAGG CCTGCGAGAA GCCATGATGT TTTACACACT CTGCTTAAAG TCCTTTTTGT
  AAGCATTTTT TTGGTTTAGG GAAGTATCTC TTGTTCGCAC ATATGCTTTC AGTTGAACAG
  ATTCCTTTTT TAAAAAAGAG ACACTGGGGA ATGAGTAACT CCTGTGGCCT CACAAGAGCT
  S
  GGAATTGCTC TGCCTCTGAG CTTCAGATTC ATACTTTTTT TCTGTTTTTG GTTTTTTTGC
  TTTGTTTGAG GACTGCATCT TACTAAGTTG CCCAGGCTGA CCCAGTGTTC TCTATGTAGC
  CCAGGCAGGC CTTGAACCTA CTTAACCTCC CTAGGAGTCA GTGTTGCAGG CAGCACCATC
  AGGTTCAGCT CTCTGTGCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46716468	NES10748410	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32698241					SNP	G	G	G	G	G	C	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46716468	NES10748410	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82456955 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13290	CpG island 13290	904 bp distal
Gm64983	predicted gene, 64983	within coordinates
Npy2r	neuropeptide Y receptor Y2	1564 bp upstream
Rr578785	regulatory region 578785	1699 bp distal
Rr578786	regulatory region 578786	1074 bp distal
Rr578787	regulatory region 578787	388 bp proximal
Tssr33789	transcription start site region 33789	1594 bp upstream
Tssr33790	transcription start site region 33790	1546 bp upstream