rs32698238 SNP Detail

Summary

• ID
  rs32698238
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:82456887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATCAATCT TCAATTCATG
  TGACATCATG CTAAAGAAGC TACCTATAAA ACAGTGTTTC GTGGGCCTTT CAATTACCAG
  TACATAAAAG GCAGCAGGCC TGCGAGAAGC CATGATGTTT TACACACTCT GCTTAAAGTC
  CTTTTTGTAA GCATTTTTTT GGTTTAGGGA AGTATCTCTT GTTCGCACAT ATGCTTTCAG
  K
  TGAACAGATT CCTTTTTTAA AAAAGAGACA CTGGGGAATG AGTAACTCCT GTGGCCTCAC
  AAGAGCTGGG AATTGCTCTG CCTCTGAGCT TCAGATTCAT ACTTTTTTTC TGTTTTTGGT
  TTTTTTGCTT TGTTTGAGGA CTGCATCTTA CTAAGTTGCC CAGGCTGACC CAGTGTTCTC
  TATGTAGCCC AGGCAGGCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46716465	NES10748409	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32698238					SNP	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46716465	NES10748409	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82456887 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13290	CpG island 13290	836 bp distal
Gm64983	predicted gene, 64983	within coordinates
Npy2r	neuropeptide Y receptor Y2	1496 bp upstream
Rr578785	regulatory region 578785	1631 bp distal
Rr578786	regulatory region 578786	1006 bp distal
Rr578787	regulatory region 578787	456 bp proximal
Tssr33789	transcription start site region 33789	1526 bp upstream
Tssr33790	transcription start site region 33790	1478 bp upstream