rs32697731 SNP Detail

Summary

• ID
  rs32697731
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:82456162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCTGGAA CCCTGCGCCT
  TCAGATCACA AGCCCAGGTG TCCCAGCGGA ACACTGGCAA AACTGTCCCT CGGGAAGAAC
  GTAGAGAACA GCAGTGGGTC GTAAAACAGT CTTTCTTTGT CCAATTAGTT GACTTCAAAA
  TTCTTCGCCT TTAGTTCTTG CACCATTCGA GATTTCGAGA GAGCAGGGAG ACCATGCCTC
  S
  GGAAATGTTC CTCAGGAGTG AAGCCCGAAG GCTGAAAGAG GACATGCAGG ACTTTCAGTC
  ACGCTAGAGG GCTGTTTCAA CCTTACCCTG CAAACTCTTC ATTCACCAGC AGTCTTTCCA
  GAGGTTTGCT ACAAGTCTCT TTTCCTTCAG ATTTTAAAGG GGGCAGTAGA GACTTGAAAG
  CCAGGAAGCC AGGCTTGTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46716456	NES10748406	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32697731					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46716456	NES10748406	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82456162 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13290	CpG island 13290	111 bp distal
Gm64983	predicted gene, 64983	264 bp downstream
Npy2r	neuropeptide Y receptor Y2	771 bp upstream
Rr578785	regulatory region 578785	906 bp distal
Rr578786	regulatory region 578786	281 bp distal
Rr578787	regulatory region 578787	1181 bp proximal
Tssr33789	transcription start site region 33789	801 bp upstream
Tssr33790	transcription start site region 33790	753 bp upstream