rs32685503 SNP Detail

Summary

• ID
  rs32685503
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141812329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AACTTTCCAG CGAATCACAG GCTGACTTCT CCCTCCGCCT GGAGCCGGGG AGGGTGATCT
  GAACTGAGTG GCGCCTCACC TGGCTGGAAG TTTGCCTGGG AACCCCACGA CTCCAGGCAC
  AGATCTATGT GCCCTGCCAG CTCTGAATCT CGACCTGGGT GGCTTCGTGG GTGCGCAGCC
  AGCTCTTTGA AGTTCAAGGC TTGAGAAGTC CCTGGGCAGC CGGGTGTCAG AGGATTCGGC
  TGGGGTTAAA AGGCGCCTCC TACTGGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGAG
  W
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA TTGAAAGTCC GCTTTCTGGA
  TAAACCGCAC AGCTTGGCTG CAGCCAAGTT CACTTGGAAT TCCTGGGTAC ATACTTCCCG
  AGCTGTATAC TTCCGGAGTC CAATCACACT CTATACACTG CTACTTCTTA TTTGCACTGA
  TAGAAAGGGA TTAATTGGGA AATGGCTTGT GATTTGGGAA GTGAAAAGGG CATTTTTGGA
  AACAGGTTCG GAGCGCAAGA GTAACTGCTA ACATTTCACG TCCTTACTCT GAACCCGGCC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss45679957	mCV22555364	ABI	CRAMUS_MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs32685503					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141812329 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15252	CpG island 15252	208 bp distal
Rr603988	regulatory region 603988	668 bp distal
Rr603989	regulatory region 603989	697 bp distal
Rr603990	regulatory region 603990	within coordinates
Rr603991	regulatory region 603991	38 bp distal
Tmem51	transmembrane protein 51	714 bp upstream
Tmem51os1	Tmem51 opposite strand 1	within coordinates
Tssr44419	transcription start site region 44419	799 bp upstream
Tssr44420	transcription start site region 44420	756 bp upstream
Tssr44421	transcription start site region 44421	455 bp upstream
Tssr44422	transcription start site region 44422	335 bp upstream