rs32660070 SNP Detail

Summary

• ID
  rs32660070
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:156269926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGC CGCCCTTCCG CAGCAACCCC
  R
  GGCTTTGATT TGACGCCGCC TTCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45676376	mCV23473441	ABI	CRAMUS_MOUSE	f	SNP	G	A	G					A		G
ss46789431	NES10982946	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	A	A	G		G	G	G	A		G	G	A	G		A
ss148128307	ENSMUSSNP845141	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
ss321445930	CHEV_4_155559578	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32660070					SNP	G	A	G	G	A	A	G	A	G	G	G	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46789431	NES10982946	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156269926 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Agrn	agrin			Intron
				Noncoding-Transcript-Variant
Cpgi15501	CpG island 15501			594 bp proximal
Gm46878	predicted gene, 46878			571 bp upstream
Rr606687	regulatory region 606687			422 bp proximal
Rr606688	regulatory region 606688			491 bp proximal
Rr606689	regulatory region 606689			724 bp proximal
Rr606690	regulatory region 606690			860 bp proximal
Tssr40793	transcription start site region 40793			710 bp upstream
Tssr45009	transcription start site region 45009			603 bp downstream
Tssr45010	transcription start site region 45010			624 bp downstream
Tssr45011	transcription start site region 45011			746 bp downstream