rs32577827 SNP Detail

Summary

• ID
  rs32577827
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148213428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTA ACAGCTGGGT TTGTGTAACA
  R
  GCAGCAGCAG GGGCCTGAAT GGGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45665479	mCV24936129	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	G
ss147993924	ENSMUSSNP450067	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		G
ss321417516	CHEV_4_147503080	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32577827					SNP	G	G	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148213428 () rs orientation: forward

Symbol	Name	Function Class
Draxin	dorsal inhibitory axon guidance protein	Intron
Mad2l2	MAD2 mitotic arrest deficient-like 2	1413 bp upstream
Rr604596	regulatory region 604596	269 bp proximal
Rr604597	regulatory region 604597	1116 bp proximal
Rr604598	regulatory region 604598	1717 bp proximal
Rr604599	regulatory region 604599	1955 bp proximal
Tssr1378	transcription start site region 1378	1862 bp upstream
Tssr40251	transcription start site region 40251	1771 bp upstream
Tssr40252	transcription start site region 40252	1804 bp upstream
Tssr40253	transcription start site region 40253	1912 bp upstream
Tssr44585	transcription start site region 44585	1667 bp downstream
Tssr44586	transcription start site region 44586	1680 bp downstream
Tssr44587	transcription start site region 44587	1707 bp downstream