rs32572834 SNP Detail

Summary

• ID
  rs32572834
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138922015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATG TTATTGCTCT TGGCTGGAAA
  Y
  GGGCCTGGGG GTCTGAACCC CTGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45665604	mCV27566437	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss147667666	ENSMUSSNP2391458	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss321380215	CHEV_4_138750619	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32572834					SNP	C	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138922015 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530077C14Rik	RIKEN cDNA 9530077C14 gene			1054 bp upstream
Capzb	capping actin protein of muscle Z-line subunit beta			Intron
				Noncoding-Transcript-Variant
Cpgi15162	CpG island 15162			702 bp distal
Rr377279	regulatory region 377279			58 bp downstream
Rr603133	regulatory region 603133			1998 bp distal
Rr603134	regulatory region 603134			1770 bp distal
Rr603135	regulatory region 603135			1608 bp distal
Rr603136	regulatory region 603136			698 bp distal
Tssr39900	transcription start site region 39900			1763 bp downstream
Tssr39901	transcription start site region 39901			1744 bp downstream
Tssr39902	transcription start site region 39902			1710 bp downstream
Tssr39903	transcription start site region 39903			1452 bp downstream
Tssr39904	transcription start site region 39904			1418 bp downstream
Tssr39905	transcription start site region 39905			1374 bp downstream
Tssr39906	transcription start site region 39906			571 bp downstream
Tssr44217	transcription start site region 44217			1986 bp upstream
Tssr44218	transcription start site region 44218			704 bp upstream