rs32539379 SNP Detail

Summary

• ID
  rs32539379
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:6389387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCTTGAT GGCTAGTAAT
  ATTGAACATC TTTTTGTGGT CTGAGAGGTT TAGACAGTTT CTCTGTGTGG CCCTGGTGTT
  CTGGAACTCA CTCTGTAGAC CGTGCTGTCC CTGAACTTAG AGATCTGCCT GCCTCTGCCT
  CCCAAGGGCA GGGACTAAAG GGTAGATTCA AAGGCATGTG CCAGCCCTCC CATTTTAAAA
  Y
  GGTTACTGGA CATTTTAAGT TATTTTGAAA AAAAATTATT AGTTCATTTG GCCATTTGTC
  GATTGGTAGT TTTATCTCCT TAGTATTTAA CTTCTGCGAT TATTTATAAG TCTGCCTATT
  AGCTGCTTGC CTGAAGTGTG GTGAAGGCTG TCCATGCCAT GGCCTTTTGC TTTGCTGATT
  GGTTCCTCTG GTGCACGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45660607	mCV22885154	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss145961194	ENSMUSSNP1281944	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32539379					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6389387 () rs orientation: forward

Symbol	Name	Function Class
Rr588384	regulatory region 588384	824 bp proximal
Sdcbp	syndecan binding protein	Intron