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rs32539379 SNP Detail
Summary
  • ID
    rs32539379
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:6389387 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTTTCTTGAT GGCTAGTAAT
    ATTGAACATC TTTTTGTGGT CTGAGAGGTT TAGACAGTTT CTCTGTGTGG CCCTGGTGTT
    CTGGAACTCA CTCTGTAGAC CGTGCTGTCC CTGAACTTAG AGATCTGCCT GCCTCTGCCT
    CCCAAGGGCA GGGACTAAAG GGTAGATTCA AAGGCATGTG CCAGCCCTCC CATTTTAAAA
    Y
    GGTTACTGGA CATTTTAAGT TATTTTGAAA AAAAATTATT AGTTCATTTG GCCATTTGTC
    GATTGGTAGT TTTATCTCCT TAGTATTTAA CTTCTGCGAT TATTTATAAG TCTGCCTATT
    AGCTGCTTGC CTGAAGTGTG GTGAAGGCTG TCCATGCCAT GGCCTTTTGC TTTGCTGATT
    GGTTCCTCTG GTGCACGGAA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
C57BL/6J
DBA/2J
ss45660607 mCV22885154 ABI CRAMUS_MOUSE f SNP C T T
ss145961194 ENSMUSSNP1281944 ENSEMBL ENSEMBL_Sanger f SNP C T
SNP Consensus Information
SNP Consensus Type
A/J
C57BL/6J
DBA/2J
rs32539379 SNP C T T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:6389387 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr588384 regulatory region 588384 824 bp proximal
Sdcbp syndecan binding protein Intron

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory