rs32501974 SNP Detail

Summary

• ID
  rs32501974
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138922187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGG ACTTAGTCTC CACAGAATCA
  Y
  CTAGGCTTTC GCTTTGTCCA TCTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45655469	mCV27566436	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss147667671	ENSMUSSNP3777339	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss321380217	CHEV_4_138750791	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32501974					SNP	T	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138922187 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530077C14Rik	RIKEN cDNA 9530077C14 gene			1226 bp upstream
Capzb	capping actin protein of muscle Z-line subunit beta			Intron
				Noncoding-Transcript-Variant
Cpgi15162	CpG island 15162			874 bp distal
Rr377279	regulatory region 377279			230 bp downstream
Rr377280	regulatory region 377280			1979 bp upstream
Rr603134	regulatory region 603134			1942 bp distal
Rr603135	regulatory region 603135			1780 bp distal
Rr603136	regulatory region 603136			870 bp distal
Tssr39900	transcription start site region 39900			1935 bp downstream
Tssr39901	transcription start site region 39901			1916 bp downstream
Tssr39902	transcription start site region 39902			1882 bp downstream
Tssr39903	transcription start site region 39903			1624 bp downstream
Tssr39904	transcription start site region 39904			1590 bp downstream
Tssr39905	transcription start site region 39905			1546 bp downstream
Tssr39906	transcription start site region 39906			743 bp downstream
Tssr44218	transcription start site region 44218			876 bp upstream