rs32500339 SNP Detail

Summary

• ID
  rs32500339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109265394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGC TTGGCTGACT ACCTTTCTGC
  R
  CAGCCCTGTC CGAACACCAC CCTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45655580	mCV23909889	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss147197593	ENSMUSSNP3904919	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss321254100	CHEV_4_109080802	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32500339					SNP	A	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109265394 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14573	CpG island 14573			295 bp distal
Rr597311	regulatory region 597311			1975 bp distal
Rr597313	regulatory region 597313			1077 bp distal
Rr597314	regulatory region 597314			within coordinates
Tssr38345	transcription start site region 38345			1434 bp downstream
Tssr38346	transcription start site region 38346			1078 bp downstream
Tssr38347	transcription start site region 38347			1032 bp downstream
Tssr42761	transcription start site region 42761			1935 bp upstream
Ttc39a	tetratricopeptide repeat domain 39A			Intron
				Noncoding-Transcript-Variant
Ttc39aos1	Ttc39a opposite strand RNA 1			1964 bp upstream