rs32494947 SNP Detail

Summary

• ID
  rs32494947
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:161615891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGAAGTGGC ACTGCTGTCT ACCCAGAAGA TCTGGGGACA
  TGGGTAATTC ATGGGCTGCT GCATGGCACC CAGCCCCAGG AAAGGGTTTC CTTCTCACAG
  Y
  CTTGTGGAGG AGACTCAGGT GTCAAGGACA GAACTCTGAC GCTGACTGCT CCAGAGAAGC
  TAAGTTTTCT TTATAAAGTT TCCGCAGTCA AGGGAAACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45153954	mCV24537058	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss145922209	ENSMUSSNP3831676	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32494947					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161615891 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fasl	Fas ligand			mRNA-UTR
				Splice-Site
Rr421846	regulatory region 421846			26 bp proximal
Tssr14586	transcription start site region 14586			37 bp downstream
Tssr14587	transcription start site region 14587			127 bp downstream
Tssr14588	transcription start site region 14588			142 bp downstream
Tssr14589	transcription start site region 14589			150 bp downstream
Tssr14590	transcription start site region 14590			167 bp downstream
Tssr14591	transcription start site region 14591			178 bp downstream