rs32472480 SNP Detail

Summary

• ID
  rs32472480
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141812327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAAACTTTCC AGCGAATCAC AGGCTGACTT CTCCCTCCGC CTGGAGCCGG GGAGGGTGAT
  CTGAACTGAG TGGCGCCTCA CCTGGCTGGA AGTTTGCCTG GGAACCCCAC GACTCCAGGC
  ACAGATCTAT GTGCCCTGCC AGCTCTGAAT CTCGACCTGG GTGGCTTCGT GGGTGCGCAG
  CCAGCTCTTT GAAGTTCAAG GCTTGAGAAG TCCCTGGGCA GCCGGGTGTC AGAGGATTCG
  GCTGGGGTTA AAAGGCGCCT CCTACTGGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  W
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GATTGAAAGT CCGCTTTCTG
  GATAAACCGC ACAGCTTGGC TGCAGCCAAG TTCACTTGGA ATTCCTGGGT ACATACTTCC
  CGAGCTGTAT ACTTCCGGAG TCCAATCACA CTCTATACAC TGCTACTTCT TATTTGCACT
  GATAGAAAGG GATTAATTGG GAAATGGCTT GTGATTTGGG AAGTGAAAAG GGCATTTTTG
  GAAACAGGTT CGGAGCGCAA GAGTAACTGC TAACATTTCA CGTCCTTACT CTGAACCCGG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss45651672	mCV22555368	ABI	CRAMUS_MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs32472480					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141812327 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15252	CpG island 15252	206 bp distal
Rr603988	regulatory region 603988	666 bp distal
Rr603989	regulatory region 603989	695 bp distal
Rr603990	regulatory region 603990	within coordinates
Rr603991	regulatory region 603991	36 bp distal
Tmem51	transmembrane protein 51	712 bp upstream
Tmem51os1	Tmem51 opposite strand 1	within coordinates
Tssr44419	transcription start site region 44419	797 bp upstream
Tssr44420	transcription start site region 44420	754 bp upstream
Tssr44421	transcription start site region 44421	453 bp upstream
Tssr44422	transcription start site region 44422	333 bp upstream