rs32469796 SNP Detail

Summary

• ID
  rs32469796
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101352730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCCCAGG CTGGTCTTGC
  ATTAGTCATC CTCCTGCCTC AGCTTCTCCA GAACTAGGAT TGTTGGTGAG TCCTGCCAAG
  CCAAGCACAC TGAGTTCTGT CTGAAGTCGG TTGGGGGTAT TTCGGAGGCT GTAATTTCTG
  GTCTCTTTAT TCAGCTTATT GATCTATGTG CCTTGTCCCT TTGCAGACAC CACACTGTTT
  Y
  ATTACAGCAC CAAGAACACA TTGGGACCTT ACATGTTTAC TGTGAGCACA GTCGCACTCT
  GAACACTGCC TGTTTTGACA CCTGGGTTTC CAATCCTATA GAGTGATTTT TCCCACCTGA
  GTTTTTACAT ATACTGTGTC ATGGTCCTTT GTTCTGAAAT ACTTCAGTGT ACATTTTCTA
  AAAATAAGAA CTTTTTAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45652587	mCV22691413	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss147123215	ENSMUSSNP2328275	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss321230245	CHEV_4_101168138	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32469796					SNP	C	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101352730 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14501	CpG island 14501	602 bp proximal
Dnajc6	DnaJ heat shock protein family (Hsp40) member C6	1098 bp upstream
Rr596165	regulatory region 596165	1638 bp distal
Rr596166	regulatory region 596166	625 bp proximal
Rr596167	regulatory region 596167	1126 bp proximal
Tssr37995	transcription start site region 37995	1012 bp upstream
Tssr37996	transcription start site region 37996	1143 bp upstream