GCAGCCCAGG CTGGTCTTGC ATTAGTCATC CTCCTGCCTC AGCTTCTCCA GAACTAGGAT TGTTGGTGAG TCCTGCCAAG CCAAGCACAC TGAGTTCTGT CTGAAGTCGG TTGGGGGTAT TTCGGAGGCT GTAATTTCTG GTCTCTTTAT TCAGCTTATT GATCTATGTG CCTTGTCCCT TTGCAGACAC CACACTGTTT Y ATTACAGCAC CAAGAACACA TTGGGACCTT ACATGTTTAC TGTGAGCACA GTCGCACTCT GAACACTGCC TGTTTTGACA CCTGGGTTTC CAATCCTATA GAGTGATTTT TCCCACCTGA GTTTTTACAT ATACTGTGTC ATGGTCCTTT GTTCTGAAAT ACTTCAGTGT ACATTTTCTA AAAATAAGAA CTTTTTAAGG Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/J |
C57BL/6J |
DBA/2J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|---|
ss45652587 | mCV22691413 | ABI | CRAMUS_MOUSE | f | SNP | C | T | C | C | ||
ss147123215 | ENSMUSSNP2328275 | ENSEMBL | ENSEMBL_Sanger | f | SNP | T | C | ||||
ss321230245 | CHEV_4_101168138 | CHEVERUD | SCREENING_POP | f | SNP | T | T | ||||
SNP Consensus Information | |||||||||||
SNP | Consensus Type | 129X1/SvJ |
A/J |
C57BL/6J |
DBA/2J |
LG/J |
SM/J |
||||
rs32469796 | SNP | C | T | C | C | T | T |
Location: Chr4:101352730 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi14501 | CpG island 14501 | 602 bp proximal | ||||||
Dnajc6 | DnaJ heat shock protein family (Hsp40) member C6 | 1098 bp upstream | ||||||
Rr596165 | regulatory region 596165 | 1638 bp distal | ||||||
Rr596166 | regulatory region 596166 | 625 bp proximal | ||||||
Rr596167 | regulatory region 596167 | 1126 bp proximal | ||||||
Tssr37995 | transcription start site region 37995 | 1012 bp upstream | ||||||
Tssr37996 | transcription start site region 37996 | 1143 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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