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rs32469796 SNP Detail
Summary
  • ID
    rs32469796
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:101352730 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCAGCCCAGG CTGGTCTTGC
    ATTAGTCATC CTCCTGCCTC AGCTTCTCCA GAACTAGGAT TGTTGGTGAG TCCTGCCAAG
    CCAAGCACAC TGAGTTCTGT CTGAAGTCGG TTGGGGGTAT TTCGGAGGCT GTAATTTCTG
    GTCTCTTTAT TCAGCTTATT GATCTATGTG CCTTGTCCCT TTGCAGACAC CACACTGTTT
    Y
    ATTACAGCAC CAAGAACACA TTGGGACCTT ACATGTTTAC TGTGAGCACA GTCGCACTCT
    GAACACTGCC TGTTTTGACA CCTGGGTTTC CAATCCTATA GAGTGATTTT TCCCACCTGA
    GTTTTTACAT ATACTGTGTC ATGGTCCTTT GTTCTGAAAT ACTTCAGTGT ACATTTTCTA
    AAAATAAGAA CTTTTTAAGG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
ss45652587 mCV22691413 ABI CRAMUS_MOUSE f SNP C T C C
ss147123215 ENSMUSSNP2328275 ENSEMBL ENSEMBL_Sanger f SNP T C
ss321230245 CHEV_4_101168138 CHEVERUD SCREENING_POP f SNP T T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
rs32469796 SNP C T C C T T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:101352730 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi14501 CpG island 14501 602 bp proximal
Dnajc6 DnaJ heat shock protein family (Hsp40) member C6 1098 bp upstream
Rr596165 regulatory region 596165 1638 bp distal
Rr596166 regulatory region 596166 625 bp proximal
Rr596167 regulatory region 596167 1126 bp proximal
Tssr37995 transcription start site region 37995 1012 bp upstream
Tssr37996 transcription start site region 37996 1143 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory