rs32465511 SNP Detail

Summary

• ID
  rs32465511
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:115594763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGTAAGAG GGATGGAGTC TTTCAAGAAC TTTTCAGAAG
  GTGGAGCCTC GGGTGCCAGT CCCCGCCCCT GCTTCTCAGC AAGCAAAACT CTGCCTCCGC
  W
  GTAAGTTGAT GCGGTCAGCC GCGGTCCGAC AGGGGCGGGG CCTACTAACT GTGGCTCCAG
  ACCCAGCACG AGCCAGAGCC GCGGCCCCTT TAACGTTCC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45650867	mCV24655202	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs32465511					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:115594763 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14611	CpG island 14611	within coordinates
Cpgi14612	CpG island 14612	1112 bp proximal
Efcab14	EF-hand calcium binding domain 14	178 bp upstream
Rr597763	regulatory region 597763	within coordinates
Rr597764	regulatory region 597764	50 bp distal
Rr597765	regulatory region 597765	115 bp proximal
Rr597766	regulatory region 597766	394 bp proximal
Tssr38464	transcription start site region 38464	172 bp upstream
Tssr38465	transcription start site region 38465	188 bp upstream
Tssr38466	transcription start site region 38466	257 bp upstream
Tssr38467	transcription start site region 38467	847 bp upstream