rs32450704 SNP Detail

Summary

• ID
  rs32450704
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134071249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAC AGCAGACTAG CAATAACTCC
  M
  AGAGACTGGC CCAGTGCCCC CTCCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45650102	mCV22575496	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C	C
ss147525962	ENSMUSSNP6765131	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32450704					SNP	A	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134071249 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr601645	regulatory region 601645			219 bp distal
Rr601646	regulatory region 601646			869 bp proximal
Slc30a2	solute carrier family 30 (zinc transporter), member 2			Intron
				mRNA-UTR
Tssr39548	transcription start site region 39548			784 bp downstream
Tssr39549	transcription start site region 39549			727 bp downstream
Tssr39550	transcription start site region 39550			432 bp downstream
Tssr39551	transcription start site region 39551			403 bp downstream
Tssr39552	transcription start site region 39552			330 bp downstream
Tssr39553	transcription start site region 39553			258 bp downstream
Tssr39554	transcription start site region 39554			234 bp downstream
Tssr39555	transcription start site region 39555			29 bp downstream
Tssr39556	transcription start site region 39556			64 bp upstream