rs32405432 SNP Detail

Summary

• ID
  rs32405432
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:111272446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGTG TCGTGCGTGC GCGACTTCAG
  Y
  CCCCGCTCGC GACTGGATTT TGACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45643935	mCV24661315	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss147203453	ENSMUSSNP783592	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss321261805	CHEV_4_111087854	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32405432					SNP	C	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111272446 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Agbl4	ATP/GTP binding protein-like 4			Intron
Bend5	BEN domain containing 5			Coding-Synonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi14589	CpG island 14589			within coordinates
Gm68588	predicted gene, 68588			902 bp downstream
Gm68593	predicted gene, 68593			1472 bp downstream
Rr597456	regulatory region 597456			233 bp distal
Rr597457	regulatory region 597457			191 bp distal
Tssr38381	transcription start site region 38381			213 bp downstream
Tssr38382	transcription start site region 38382			31 bp downstream
Tssr38383	transcription start site region 38383			within coordinates