rs32395404 SNP Detail

Summary

• ID
  rs32395404
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101351954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCATTGC TAACTAACCA
  AATAGAGTGC CCTGTATTTT TATACTGGGT TAATCATCTA GACCACTAAA GGCCTCTTTG
  AAATCAGGGA GGTTAGGTAC TTACCCCTGT GACTTCTCAG AGTCATCAGG CCTCTACCTT
  AGGTGGCTGC TGCCTTCCTC ATGGGATCAA GGGTGATTTA TAAGCCAGAT GTAACCATGG
  M
  AACATGAGGC TAATGGCTTG ACCTTATTTG ATAGACTGGA TTGAACTATC TGAAATTCAG
  ATGTGTGTGT ATTCTTTAGT CCCTGCACTG AGGAGACAGA AGGATCTCTG TGAGCTCCAG
  GCCAGCCTGG TCTACATAGC CATAGGATAA CTGACAACAT AGAGAGAACC TATCTCCAAA
  ACTTTTTTTT TTTAAATTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45643185	mCV22691435	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	A
ss147123205	ENSMUSSNP4252167	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		A
ss321230240	CHEV_4_101167362	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32395404					SNP	A	C	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101351954 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14501	CpG island 14501	1378 bp proximal
Dnajc6	DnaJ heat shock protein family (Hsp40) member C6	1874 bp upstream
Rr596165	regulatory region 596165	862 bp distal
Rr596166	regulatory region 596166	1401 bp proximal
Rr596167	regulatory region 596167	1902 bp proximal
Tssr37995	transcription start site region 37995	1788 bp upstream
Tssr37996	transcription start site region 37996	1919 bp upstream