rs32350485 SNP Detail

Summary

• ID
  rs32350485
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119238580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTGAAAC CTATCTTAGA
  GCAAAGTCTC ATCTTTTATT TTCATTTCTT ACCTCATTAA AATATTGTAC TTTAATTGTC
  TCTTGGTCTT TCATTCTGCT GTCTCTTCAG TCCTCCTGGT TTAATGGTTA ATGATAACTC
  GGGCTCTAAG ATGGAAATCT CAATCCACAT AAGTCACCAG TTAAAAAACC ATACAAGTGC
  K
  ACTAAAATAT ATGCAAAATA AGCTATGCTT GTTTAAATTA ATTTACAAAA TGATCTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTGT GTGTGTGTGT ATGTGTGTAT ACACAGTATA
  TGTGGCCACA CTTGTAATGT CTCCCATGTG GAGGACAGAG GACAACTTTT GTGGAGTCTT
  TTTTCTCCCT CTCCTTTTAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss45637640	mCV25417269	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
ss147328390	ENSMUSSNP7053472	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs32350485					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119238580 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc30	coiled-coil domain containing 30			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Splice-Site
Rr598572	regulatory region 598572			277 bp proximal