rs32333098 SNP Detail

Summary

• ID
  rs32333098
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:98305125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAA AGCATCCCCT CCAGGGAAAC
  S
  CACGGCGGGG CCGCACAGCA AAGGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46133011	mCV24171238	ABI	CRAMUS_MOUSE	f	SNP	C	G	C
ss145478282	ENSMUSSNP5988746	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32333098					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:98305125 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930558N01Rik	RIKEN cDNA 4930558N01 gene			233 bp upstream
Emsy	EMSY, BRCA2-interacting transcriptional repressor			Intron
				Noncoding-Transcript-Variant
Rr368380	regulatory region 368380			736 bp upstream
Rr651647	regulatory region 651647			within coordinates
Rr651648	regulatory region 651648			244 bp proximal
Rr651649	regulatory region 651649			404 bp proximal
Rr651650	regulatory region 651650			618 bp proximal
Rr651651	regulatory region 651651			692 bp proximal
Rr651652	regulatory region 651652			1012 bp proximal
Tssr68028	transcription start site region 68028			65 bp downstream
Tssr68029	transcription start site region 68029			227 bp upstream
Tssr68030	transcription start site region 68030			256 bp upstream
Tssr68031	transcription start site region 68031			983 bp upstream
Tssr73641	transcription start site region 73641			597 bp downstream
Tssr73642	transcription start site region 73642			612 bp downstream
Tssr73643	transcription start site region 73643			874 bp downstream