rs32289289 SNP Detail

Summary

• ID
  rs32289289
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138185917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTAGGGTC AAGAAGAGGA GTATCAATCC TCGGCACACC
  AGAACCTTCC ACATTGGGCC GCCGCTAGCA TCCACTAAAC ATCCAACCCG AGACCCAGTT
  R
  TGGACATACG TGTCTCTACC ACTAGAGCCT ACTGTTACAT GCTTGAGGAT GAGTCTGTTC
  TCTGGGGATG CATGGGGGGG GGGGGAAGTC CCAAAAGTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	DBA/2J
ss45629783	mCV24614314	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss147647511	ENSMUSSNP3512728	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	DBA/2J
rs32289289					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138185917 () rs orientation: forward

Symbol	Name	Function Class
Camk2n1	calcium/calmodulin-dependent protein kinase II inhibitor 1	mRNA-UTR
Rr377275	regulatory region 377275	232 bp downstream
Rr602932	regulatory region 602932	1817 bp distal
Rr602933	regulatory region 602933	1662 bp distal
Rr602934	regulatory region 602934	1223 bp proximal
Rr602935	regulatory region 602935	1299 bp proximal
Tssr39862	transcription start site region 39862	1885 bp downstream
Tssr39863	transcription start site region 39863	1787 bp downstream
Tssr39864	transcription start site region 39864	1721 bp downstream
Tssr39865	transcription start site region 39865	1546 bp downstream
Tssr39866	transcription start site region 39866	1226 bp downstream
Tssr39867	transcription start site region 39867	987 bp downstream
Tssr39868	transcription start site region 39868	917 bp downstream
Tssr39869	transcription start site region 39869	689 bp downstream
Tssr39870	transcription start site region 39870	660 bp downstream
Tssr39871	transcription start site region 39871	604 bp downstream
Tssr44166	transcription start site region 44166	1723 bp upstream
Tssr44167	transcription start site region 44167	1539 bp upstream
Tssr44168	transcription start site region 44168	1457 bp upstream
Tssr44169	transcription start site region 44169	1363 bp upstream
Tssr44170	transcription start site region 44170	1313 bp downstream