rs32280888 SNP Detail

Summary

• ID
  rs32280888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101214829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGA GACACAGGGT AGGTCTAAGC
  Y
  AAATACCGTG TTAGACCCCA GTTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45628476	mCV24998201	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss147122039	ENSMUSSNP7093884	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss321229517	CHEV_4_101030237	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32280888					SNP	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101214829 () rs orientation: forward

Symbol	Name	Function Class
0610043K17Rik	RIKEN cDNA 0610043K17 gene	within coordinates
Cpgi14499	CpG island 14499	454 bp distal
E130102H24Rik	RIKEN cDNA E130102H24 gene	1384 bp upstream
Rr596126	regulatory region 596126	1518 bp distal
Rr596127	regulatory region 596127	992 bp distal
Rr596128	regulatory region 596128	1257 bp distal
Rr596129	regulatory region 596129	407 bp distal
Rr596130	regulatory region 596130	164 bp proximal
Rr596131	regulatory region 596131	983 bp proximal
Rr596132	regulatory region 596132	1526 bp proximal
Tssr37988	transcription start site region 37988	1749 bp downstream
Tssr42553	transcription start site region 42553	1703 bp upstream
Tssr42554	transcription start site region 42554	1454 bp upstream
Tssr42555	transcription start site region 42555	1129 bp upstream
Tssr42556	transcription start site region 42556	1114 bp upstream
Tssr42557	transcription start site region 42557	903 bp upstream
Tssr42558	transcription start site region 42558	882 bp upstream
Tssr42559	transcription start site region 42559	839 bp upstream